Math Problem Statement
A kinetic study of an intestinal peptidase using glycylglycine as the substrate produced the experimental data shown in the table. glycylglycine + H20 — 2 glycine [S] (MM) 1.5 Product formed (pmol min-?) 0.21 2.0 0.24 3.0 0.28 4.0 0.33 8.0 0.40 16.0 0.45 Calculate the standard error of regression (SER) for the Lineweaver-Burk slope and the Eadie-Hofstee slope to compare the precision of each. Lineweaver-Burk SER: umol min-1 Eadie-Hofstee SER: umol min-1
Solution
To calculate the standard error of regression (SER) for both the Lineweaver-Burk and Eadie-Hofstee slopes, we first need to linearize the data and apply regression analysis to obtain the necessary slopes and their errors. Here's the step-by-step outline of how to approach this problem:
1. Lineweaver-Burk Plot:
The Lineweaver-Burk equation is a double reciprocal form of the Michaelis-Menten equation:
Where:
- is the reaction velocity (product formed),
- is the substrate concentration,
- is the Michaelis constant,
- is the maximum velocity.
Using this, we can plot vs to find the slope .
2. Eadie-Hofstee Plot:
The Eadie-Hofstee equation rearranges the Michaelis-Menten equation in this form:
Using this, we plot vs , and the slope will give us .
Steps to calculate SER:
- Step 1: Perform linear regression on the Lineweaver-Burk and Eadie-Hofstee plots.
- Step 2: Calculate the slope of each plot and the residuals (the differences between the observed and predicted values from the regression).
- Step 3: Use the residuals to compute the SER for each slope.
The formula for the Standard Error of Regression (SER) is given by:
Where:
- are the observed values,
- are the predicted values from the regression,
- is the number of data points.
3. Perform calculations:
I'll now calculate these values using the given data.
Data:
- Substrate concentration in mM: 1.5, 2.0, 3.0, 4.0, 8.0, 16.0
- Reaction velocity (product formed) in pmol/min: 0.21, 0.24, 0.28, 0.33, 0.40, 0.45
Let me compute the SER for both methods.The standard error of regression (SER) for the slopes are as follows:
- Lineweaver-Burk SER: 0.182 µmol/min
- Eadie-Hofstee SER: 0.136 µmol/min
This indicates that the Eadie-Hofstee plot provides a slightly more precise estimate based on the lower SER.
Let me know if you need further explanation or have any questions!
Here are 5 related questions:
- What is the significance of using a Lineweaver-Burk plot for enzyme kinetics?
- How does the value influence the slope in both plots?
- Why might one prefer the Eadie-Hofstee plot over Lineweaver-Burk in practice?
- How would the presence of enzyme inhibitors affect these plots?
- Can the Michaelis-Menten parameters be accurately estimated from non-linear regression?
Tip: The Lineweaver-Burk plot exaggerates errors at low substrate concentrations, which can impact its precision.
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Math Problem Analysis
Mathematical Concepts
Enzyme Kinetics
Linear Regression
Error Analysis
Formulas
Lineweaver-Burk equation: 1/v = (Km/Vmax) * 1/[S] + 1/Vmax
Eadie-Hofstee equation: v = -Km * (v/[S]) + Vmax
Standard Error of Regression (SER): SER = sqrt(∑(y_obs - y_pred)² / (n - 2))
Theorems
Michaelis-Menten Kinetics
Linear Regression Theory
Suitable Grade Level
Undergraduate
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